Detailed information of SNP:
|
SNP ID:
sf0105480517(Gbrowse)
Chromosome: chr01 Position: 5480517 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 68.98% | 31.02% |
| All Indica | 787 | 65.44% | 34.56% |
| All Japonica | 497 | 74.85% | 25.15% |
| Aus | 57 | 85.96% | 14.04% |
| Indica I | 371 | 89.49% | 10.51% |
| Indica II | 211 | 30.33% | 69.67% |
| Indica Intermediate | 205 | 58.05% | 41.95% |
| Temperate Japonica | 335 | 67.76% | 32.24% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105480517 | A->G | INTERGENIC | None |