Detailed information of SNP:
|
SNP ID:
sf0105513748(Gbrowse)
Chromosome: chr01 Position: 5513748 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 81.32% | 18.68% |
| All Indica | 799 | 69.96% | 30.04% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 30.99% | 69.01% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105513748 | C->T | INTERGENIC | None |