Detailed information of SNP:
|
SNP ID:
sf0105520069(Gbrowse)
Chromosome: chr01 Position: 5520069 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.26% | 34.74% |
| All Indica | 799 | 69.21% | 30.79% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105520069 | T->C | INTERGENIC | None |