Detailed information of SNP:



SNP ID: sf0105522729(Gbrowse)

Chromosome: chr01

Position: 5522729
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 96.76% 3.24%
All Indica799 99.62% 0.38%
All Japonica497 91.55% 8.45%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 59.57% 40.43%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0105522729 G->A INTERGENIC None