Detailed information of SNP:
|
SNP ID:
sf0105550046(Gbrowse)
Chromosome: chr01 Position: 5550046 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1213 | 64.88% | 35.12% |
| All Indica | 704 | 85.23% | 14.77% |
| All Japonica | 393 | 24.17% | 75.83% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 298 | 78.52% | 21.48% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 197 | 82.23% | 17.77% |
| Temperate Japonica | 281 | 8.54% | 91.46% |
| Tropical Japonica | 62 | 85.48% | 14.52% |
| Japonica Intermediate | 50 | 36.00% | 64.00% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105550046 | G->A | INTERGENIC | None |