Detailed information of SNP:
|
SNP ID:
sf0105606941(Gbrowse)
Chromosome: chr01 Position: 5606941 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 95.94% | 4.06% |
| All Indica | 792 | 94.70% | 5.30% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 80.10% | 19.90% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105606941 | G->A | INTERGENIC | None |