Detailed information of SNP:
|
SNP ID:
sf0105611155(Gbrowse)
Chromosome: chr01 Position: 5611155 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.50% | 41.50% |
| All Indica | 797 | 38.27% | 61.73% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 50.27% | 49.73% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 210 | 22.86% | 77.14% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105611155 | T->C | INTERGENIC | None |