Detailed information of SNP:
|
SNP ID:
sf0105621335(Gbrowse)
Chromosome: chr01 Position: 5621335 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.76% | 41.24% |
| All Indica | 796 | 38.69% | 61.31% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 51.88% | 48.12% |
| Indica II | 213 | 32.39% | 67.61% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105621335 | C->T | INTERGENIC | None |