Detailed information of SNP:
|
SNP ID:
sf0105625001(Gbrowse)
Chromosome: chr01 Position: 5625001 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 71.11% | 28.89% |
| All Indica | 792 | 67.42% | 32.58% |
| All Japonica | 409 | 71.88% | 28.12% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 53.48% | 46.52% |
| Indica II | 212 | 73.11% | 26.89% |
| Indica Intermediate | 206 | 86.89% | 13.11% |
| Temperate Japonica | 258 | 77.52% | 22.48% |
| Tropical Japonica | 92 | 55.43% | 44.57% |
| Japonica Intermediate | 59 | 72.88% | 27.12% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105625001 | T->A | INTERGENIC | None |