Detailed information of SNP:
|
SNP ID:
sf0105634044(Gbrowse)
Chromosome: chr01 Position: 5634044 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1256 | 64.81% | 35.19% |
| All Indica | 644 | 48.29% | 51.71% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 370 | 51.35% | 48.65% |
| Indica II | 122 | 57.38% | 42.62% |
| Indica Intermediate | 152 | 33.55% | 66.45% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105634044 | T->A | INTERGENIC | None |