Detailed information of SNP:
|
SNP ID:
sf0105635088(Gbrowse)
Chromosome: chr01 Position: 5635088 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 55.67% | 44.33% |
| All Indica | 792 | 35.73% | 64.27% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 47.33% | 52.67% |
| Indica II | 209 | 30.62% | 69.38% |
| Indica Intermediate | 209 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105635088 | A->G | INTERGENIC | None |