Detailed information of SNP:
|
SNP ID:
sf0105636070(Gbrowse)
Chromosome: chr01 Position: 5636070 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.96% | 44.04% |
| All Indica | 797 | 36.51% | 63.49% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 373 | 47.72% | 52.28% |
| Indica II | 213 | 31.92% | 68.08% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105636070 | T->C | INTERGENIC | None |