Detailed information of SNP:
|
SNP ID:
sf0105639821(Gbrowse)
Chromosome: chr01 Position: 5639821 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 82.00% | 18.00% |
| All Indica | 784 | 70.15% | 29.85% |
| All Japonica | 477 | 98.32% | 1.68% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 54.08% | 45.92% |
| Indica II | 207 | 79.23% | 20.77% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 325 | 98.46% | 1.54% |
| Tropical Japonica | 86 | 98.84% | 1.16% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105639821 | C->T | LOC_Os01g10580(LOC_Os01g10580.1) | Non-Synonymous SNP |