Detailed information of SNP:
|
SNP ID:
sf0105660905(Gbrowse)
Chromosome: chr01 Position: 5660905 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 59.69% | 40.31% |
| All Indica | 796 | 65.33% | 34.67% |
| All Japonica | 496 | 44.56% | 55.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 51.87% | 48.13% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 53.13% | 46.87% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105660905 | T->G | INTERGENIC | None |