Detailed information of SNP:
|
SNP ID:
sf0105708551(Gbrowse)
Chromosome: chr01 Position: 5708551 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1169 | 96.41% | 3.59% |
| All Indica | 765 | 97.65% | 2.35% |
| All Japonica | 285 | 92.63% | 7.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 356 | 97.47% | 2.53% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 197 | 97.97% | 2.03% |
| Temperate Japonica | 184 | 99.46% | 0.54% |
| Tropical Japonica | 56 | 66.07% | 33.93% |
| Japonica Intermediate | 45 | 97.78% | 2.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105708551 | G->A | INTERGENIC | None |