Detailed information of SNP:
|
SNP ID:
sf0105751606(Gbrowse)
Chromosome: chr01 Position: 5751606 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 95.29% | 4.71% |
| All Indica | 795 | 92.96% | 7.04% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 56 | 91.07% | 8.93% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 209 | 75.60% | 24.40% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105751606 | G->A | INTERGENIC | None |