Detailed information of SNP:
|
SNP ID:
sf0105751914(Gbrowse)
Chromosome: chr01 Position: 5751914 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 94.64% | 5.36% |
| All Indica | 779 | 92.17% | 7.83% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 85.47% | 14.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105751914 | T->A | INTERGENIC | None |