Detailed information of SNP:
|
SNP ID:
sf0105752465(Gbrowse)
Chromosome: chr01 Position: 5752465 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 94.31% | 5.69% |
| All Indica | 772 | 95.21% | 4.79% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 52 | 42.31% | 57.69% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 189 | 86.24% | 13.76% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105752465 | C->T | INTERGENIC | None |