Detailed information of SNP:
|
SNP ID:
sf0105756117(Gbrowse)
Chromosome: chr01 Position: 5756117 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 87.81% | 12.19% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 91.55% | 8.45% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105756117 | T->G | INTERGENIC | None |