Detailed information of SNP:
|
SNP ID:
sf0105757841(Gbrowse)
Chromosome: chr01 Position: 5757841 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.06% | 40.94% |
| All Indica | 799 | 38.67% | 61.33% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 14.40% | 85.60% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105757841 | T->C | INTERGENIC | None |