Detailed information of SNP:
|
SNP ID:
sf0105760092(Gbrowse)
Chromosome: chr01 Position: 5760092 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.34% | 37.66% |
| All Indica | 798 | 39.72% | 60.28% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 11.23% | 88.77% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 42.65% | 57.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105760092 | T->C | LOC_Os01g10790(LOC_Os01g10790.1) | INTRON |