Detailed information of SNP:
|
SNP ID:
sf0105771813(Gbrowse)
Chromosome: chr01 Position: 5771813 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 50.43% | 49.57% |
| All Indica | 779 | 69.83% | 30.17% |
| All Japonica | 492 | 14.84% | 85.16% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 88.44% | 11.56% |
| Indica II | 210 | 49.52% | 50.48% |
| Indica Intermediate | 197 | 56.35% | 43.65% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 92 | 31.52% | 68.48% |
| Japonica Intermediate | 65 | 50.77% | 49.23% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105771813 | T->C | INTERGENIC | None |