Detailed information of SNP:
|
SNP ID:
sf0105778349(Gbrowse)
Chromosome: chr01 Position: 5778349 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 79.32% | 20.68% |
| All Indica | 793 | 81.21% | 18.79% |
| All Japonica | 496 | 86.29% | 13.71% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 210 | 75.24% | 24.76% |
| Indica Intermediate | 209 | 64.59% | 35.41% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105778349 | T->C | INTERGENIC | None |