Detailed information of SNP:
|
SNP ID:
sf0105807299(Gbrowse)
Chromosome: chr01 Position: 5807299 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.56% | 9.44% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105807299 | G->A | LOC_Os01g10880(LOC_Os01g10880.1) | Non-Synonymous SNP |