Detailed information of SNP:
|
SNP ID:
sf0105832744(Gbrowse)
Chromosome: chr01 Position: 5832744 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 96.81% | 3.19% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 489 | 92.84% | 7.16% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 62 | 62.90% | 37.10% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105832744 | C->T | LOC_Os01g10940(LOC_Os01g10940.1) | Non-Synonymous SNP |