Detailed information of SNP:
|
SNP ID:
sf0105864082(Gbrowse)
Chromosome: chr01 Position: 5864082 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 86.59% | 13.41% |
| All Indica | 798 | 86.09% | 13.91% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105864082 | A->G | INTERGENIC | None |