Detailed information of SNP:
|
SNP ID:
sf0105867529(Gbrowse)
Chromosome: chr01 Position: 5867529 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1221 | 64.62% | 35.38% |
| All Indica | 688 | 68.17% | 31.83% |
| All Japonica | 417 | 68.59% | 31.41% |
| Aus | 66 | 1.52% | 98.48% |
| Indica I | 307 | 91.86% | 8.14% |
| Indica II | 185 | 49.73% | 50.27% |
| Indica Intermediate | 196 | 48.47% | 51.53% |
| Temperate Japonica | 276 | 76.81% | 23.19% |
| Tropical Japonica | 79 | 62.03% | 37.97% |
| Japonica Intermediate | 62 | 40.32% | 59.68% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105867529 | G->A | LOC_Os01g11000(LOC_Os01g11000.1) | INTRON |