Detailed information of SNP:
|
SNP ID:
sf0105868431(Gbrowse)
Chromosome: chr01 Position: 5868431 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 86.60% | 13.40% |
| All Indica | 799 | 85.98% | 14.02% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105868431 | G->C | LOC_Os01g11000(LOC_Os01g11000.1) | Non-Synonymous SNP |