Detailed information of SNP:
|
SNP ID:
sf0105888711(Gbrowse)
Chromosome: chr01 Position: 5888711 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.08% | 21.92% |
| All Indica | 799 | 79.10% | 20.90% |
| All Japonica | 497 | 85.31% | 14.69% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105888711 | G->A | LOC_Os01g11030(LOC_Os01g11030.1) | INTRON |