Detailed information of SNP:
|
SNP ID:
sf0105902122(Gbrowse)
Chromosome: chr01 Position: 5902122 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 79.21% | 20.79% |
| All Indica | 780 | 78.59% | 21.41% |
| All Japonica | 493 | 86.61% | 13.39% |
| Aus | 62 | 27.42% | 72.58% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 208 | 68.27% | 31.73% |
| Indica Intermediate | 200 | 59.50% | 40.50% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 65 | 52.31% | 47.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105902122 | G->A | LOC_Os01g11054(LOC_Os01g11054.1) | INTRON |