Detailed information of SNP:
|
SNP ID:
sf0105922602(Gbrowse)
Chromosome: chr01 Position: 5922602 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 98.80% | 1.20% |
| All Indica | 797 | 99.25% | 0.75% |
| All Japonica | 492 | 97.76% | 2.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 97.16% | 2.84% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105922602 | C->T | LOC_Os01g11110(LOC_Os01g11110.1) | INTRON |
| sf0105922602 | C->T | LOC_Os01g11110(LOC_Os01g11110.2) | INTRON |