Detailed information of SNP:
|
SNP ID:
sf0105930184(Gbrowse)
Chromosome: chr01 Position: 5930184 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 97.18% | 2.82% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 494 | 92.11% | 7.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105930184 | C->T | LOC_Os01g11110(LOC_Os01g11110.1) | INTRON |
| sf0105930184 | C->T | LOC_Os01g11110(LOC_Os01g11110.2) | INTRON |