Detailed information of SNP:
|
SNP ID:
sf0105956608(Gbrowse)
Chromosome: chr01 Position: 5956608 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 77.10% | 22.90% |
| All Indica | 788 | 75.13% | 24.87% |
| All Japonica | 485 | 88.04% | 11.96% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 373 | 94.37% | 5.63% |
| Indica II | 208 | 60.58% | 39.42% |
| Indica Intermediate | 207 | 55.07% | 44.93% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 57 | 57.89% | 42.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0105956608 | C->T | INTERGENIC | None |