Detailed information of SNP:
|
SNP ID:
sf0106047931(Gbrowse)
Chromosome: chr01 Position: 6047931 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 94.42% | 5.58% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 495 | 85.05% | 14.95% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 92 | 63.04% | 36.96% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106047931 | C->T | INTERGENIC | None |