Detailed information of SNP:
|
SNP ID:
sf0106063396(Gbrowse)
Chromosome: chr01 Position: 6063396 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 88.23% | 11.77% |
| All Indica | 758 | 91.82% | 8.18% |
| All Japonica | 486 | 82.92% | 17.08% |
| Aus | 55 | 78.18% | 21.82% |
| Indica I | 370 | 97.84% | 2.16% |
| Indica II | 200 | 90.50% | 9.50% |
| Indica Intermediate | 188 | 81.38% | 18.62% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 84 | 48.81% | 51.19% |
| Japonica Intermediate | 67 | 53.73% | 46.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 94.74% | 5.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106063396 | C->T | INTERGENIC | None |