Detailed information of SNP:
|
SNP ID:
sf0106063420(Gbrowse)
Chromosome: chr01 Position: 6063420 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1329 | 92.25% | 7.75% |
| All Indica | 761 | 94.22% | 5.78% |
| All Japonica | 459 | 89.54% | 10.46% |
| Aus | 56 | 83.93% | 16.07% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 185 | 87.57% | 12.43% |
| Temperate Japonica | 327 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 51.85% | 48.15% |
| Japonica Intermediate | 51 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106063420 | A->G | INTERGENIC | None |