Detailed information of SNP:
|
SNP ID:
sf0106102383(Gbrowse)
Chromosome: chr01 Position: 6102383 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 73.55% | 26.45% |
| All Indica | 799 | 77.72% | 22.28% |
| All Japonica | 492 | 77.44% | 22.56% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 56.87% | 43.13% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 63 | 47.62% | 52.38% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106102383 | T->C | INTERGENIC | None |