Detailed information of SNP:
|
SNP ID:
sf0106105067(Gbrowse)
Chromosome: chr01 Position: 6105067 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.48% | 26.52% |
| All Indica | 799 | 78.22% | 21.78% |
| All Japonica | 496 | 76.41% | 23.59% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 57.35% | 42.65% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106105067 | C->T | INTERGENIC | None |