Detailed information of SNP:



SNP ID: sf0106129897(Gbrowse)

Chromosome: chr01

Position: 6129897
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1419 86.96% 13.04%
All Indica799 86.23% 13.77%
All Japonica497 85.71% 14.29%
Aus67 100.00% 0.00%
Indica I375 94.93% 5.07%
Indica II213 96.71% 3.29%
Indica Intermediate211 60.19% 39.81%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica94 34.04% 65.96%
Japonica Intermediate68 88.24% 11.76%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0106129897 A->T INTERGENIC None