Detailed information of SNP:
|
SNP ID:
sf0106155707(Gbrowse)
Chromosome: chr01 Position: 6155707 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 78.26% | 21.74% |
| All Indica | 797 | 78.42% | 21.58% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106155707 | T->C | INTERGENIC | None |