Detailed information of SNP:
|
SNP ID:
sf0106181650(Gbrowse)
Chromosome: chr01 Position: 6181650 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 62.77% | 37.23% |
| All Indica | 790 | 91.77% | 8.23% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 369 | 98.10% | 1.90% |
| Indica II | 212 | 84.43% | 15.57% |
| Indica Intermediate | 209 | 88.04% | 11.96% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106181650 | C->T | INTERGENIC | None |