Detailed information of SNP:
|
SNP ID:
sf0106181662(Gbrowse)
Chromosome: chr01 Position: 6181662 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 76.17% | 23.83% |
| All Indica | 798 | 78.95% | 21.05% |
| All Japonica | 489 | 78.73% | 21.27% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 61 | 55.74% | 44.26% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106181662 | C->T | INTERGENIC | None |