Detailed information of SNP:
|
SNP ID:
sf0106183160(Gbrowse)
Chromosome: chr01 Position: 6183160 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 76.15% | 23.85% |
| All Indica | 799 | 78.72% | 21.28% |
| All Japonica | 496 | 79.23% | 20.77% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 69.95% | 30.05% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106183160 | G->A | INTERGENIC | None |