Detailed information of SNP:
|
SNP ID:
sf0106186082(Gbrowse)
Chromosome: chr01 Position: 6186082 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 61.03% | 38.97% |
| All Indica | 787 | 92.38% | 7.62% |
| All Japonica | 496 | 15.32% | 84.68% |
| Aus | 58 | 34.48% | 65.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 201 | 78.61% | 21.39% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 69.89% | 30.11% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106186082 | A->T | INTERGENIC | None |