Detailed information of SNP:
|
SNP ID:
sf0106202527(Gbrowse)
Chromosome: chr01 Position: 6202527 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 74.12% | 25.88% |
| All Indica | 798 | 78.20% | 21.80% |
| All Japonica | 495 | 77.17% | 22.83% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 69.81% | 30.19% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106202527 | G->C | INTERGENIC | None |