Detailed information of SNP:



SNP ID: sf0106215371(Gbrowse)

Chromosome: chr01

Position: 6215371
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1414 72.63% 27.37%
All Indica798 99.37% 0.63%
All Japonica496 25.81% 74.19%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II212 100.00% 0.00%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 2.99% 97.01%
Tropical Japonica93 84.95% 15.05%
Japonica Intermediate68 57.35% 42.65%
Group VI/Aromatic11 36.36% 63.64%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0106215371 C->T INTERGENIC None