Detailed information of SNP:
|
SNP ID:
sf0106215371(Gbrowse)
Chromosome: chr01 Position: 6215371 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 72.63% | 27.37% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 496 | 25.81% | 74.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106215371 | C->T | INTERGENIC | None |