Detailed information of SNP:



SNP ID: sf0106284349(Gbrowse)

Chromosome: chr01

Position: 6284349
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 68.22% 31.78%
All Indica799 98.37% 1.63%
All Japonica497 15.09% 84.91%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 97.65% 2.35%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 59.57% 40.43%
Japonica Intermediate68 23.53% 76.47%
Group VI/Aromatic14 64.29% 35.71%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0106284349 C->T INTERGENIC None