Detailed information of SNP:
|
SNP ID:
sf0106293787(Gbrowse)
Chromosome: chr01 Position: 6293787 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 90.56% | 9.44% |
| All Indica | 792 | 95.08% | 4.92% |
| All Japonica | 496 | 92.14% | 7.86% |
| Aus | 59 | 22.03% | 77.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 82.13% | 17.87% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106293787 | C->T | INTERGENIC | None |