Detailed information of SNP:
|
SNP ID:
sf0106293847(Gbrowse)
Chromosome: chr01 Position: 6293847 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 77.75% | 22.25% |
| All Indica | 782 | 82.74% | 17.26% |
| All Japonica | 497 | 79.07% | 20.93% |
| Aus | 65 | 12.31% | 87.69% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 204 | 79.41% | 20.59% |
| Indica Intermediate | 205 | 65.37% | 34.63% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106293847 | G->T | INTERGENIC | None |