Detailed information of SNP:
|
SNP ID:
sf0106294051(Gbrowse)
Chromosome: chr01 Position: 6294051 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.14% | 25.86% |
| All Indica | 799 | 78.35% | 21.65% |
| All Japonica | 497 | 78.47% | 21.53% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0106294051 | G->T | INTERGENIC | None |